垂直.理由:∵在△ABC中,AB=AC,AD是高,∴∠BAD=∠CAD,∵AE=AF,∴∠E=∠EFA,∵∠BAC=∠E+∠EFA=2∠EFA,∴∠EFA=∠BAD,∴EF∥AD,∵AD⊥BC,∴EF⊥BC.故EF与BC的位置关系为:垂直.