不是时态问题，是句子结构问题。建议改成：
Is it that girl who just went by Alice ?
或
Was it that girl who just went by Alice ?
1. Was that girl who just went by Alice?
用was要比用is好。
2. Was the bus that just passed NO. 32 ?
3. Did you see that No. 32 Bus had passed, didn't you? （宾语从句，不是定语从句）
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